J3_4V6M_032

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V6M|1|B8|A|504, 4V6M|1|B8|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6M_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.207

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6M|1|B8|G|30
4V6M|1|B8|C|31
*
4V6M|1|B8|G|474
4V6M|1|B8|C|475
4V6M|1|B8|G|476
4V6M|1|B8|A|477
4V6M|1|B8|A|478
4V6M|1|B8|A|479
4V6M|1|B8|A|480
4V6M|1|B8|G|481
4V6M|1|B8|A|482
4V6M|1|B8|A|483
4V6M|1|B8|C|484
*
4V6M|1|B8|G|496
4V6M|1|B8|A|497
4V6M|1|B8|G|498
4V6M|1|B8|U|499
4V6M|1|B8|G|500
4V6M|1|B8|A|501
4V6M|1|B8|A|502
4V6M|1|B8|A|503
4V6M|1|B8|A|504
4V6M|1|B8|A|505
4V6M|1|B8|G|506
4V6M|1|B8|A|507
4V6M|1|B8|A|508
4V6M|1|B8|C|509
4V6M|1|B8|C|510

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

Cell division protein FtsQ

Chain BA

Preprotein translocase secY subunit

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24