J3_4V6N_007

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6N_007 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.2121

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V6N|1|AB|C|1298
4V6N|1|AB|G|1299
4V6N|1|AB|G|1300
4V6N|1|AB|A|1301
4V6N|1|AB|A|1302
4V6N|1|AB|G|1303
*
4V6N|1|AB|C|1625
4V6N|1|AB|A|1626
4V6N|1|AB|G|1627
*
4V6N|1|AB|C|1639
4V6N|1|AB|A|1640
4V6N|1|AB|A|1641
4V6N|1|AB|G|1642

Current chains

Chain AB

23S ribosomal RNA

Nearby chains