3D structure

PDB id
4V6N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.1 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
4V6N|1|BA|U|653
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6N_034 not in the Motif Atlas
Homologous match to J3_5J7L_051
Geometric discrepancy: 0.2158
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V6N|1|BA|C|586
4V6N|1|BA|G|587
4V6N|1|BA|G|588
*
4V6N|1|BA|C|651
4V6N|1|BA|U|652
4V6N|1|BA|U|653
4V6N|1|BA|G|654
4V6N|1|BA|A|655
*
4V6N|1|BA|U|751
4V6N|1|BA|G|752
4V6N|1|BA|A|753
4V6N|1|BA|C|754
4V6N|1|BA|G|755

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BK
30S ribosomal protein S8
Chain BO
30S ribosomal protein S12
Chain BR
30S ribosomal protein S15
Chain BT
30S ribosomal protein S17

Coloring options:


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