J3_4V6O_004

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V6O|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6O_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1966

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V6O|1|AA|C|826
4V6O|1|AA|U|827
4V6O|1|AA|U|828
4V6O|1|AA|G|829
*
4V6O|1|AA|C|857
4V6O|1|AA|G|858
4V6O|1|AA|G|859
4V6O|1|AA|A|860
4V6O|1|AA|G|861
*
4V6O|1|AA|C|868
4V6O|1|AA|G|869
4V6O|1|AA|U|870
4V6O|1|AA|U|871
4V6O|1|AA|A|872
4V6O|1|AA|A|873
4V6O|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

30S ribosomal protein S2

Chain AK

30S ribosomal protein S8