3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
4V6O|1|BB|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6O_019 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.2145
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

4V6O|1|BB|C|1298
4V6O|1|BB|G|1299
4V6O|1|BB|G|1300
4V6O|1|BB|A|1301
4V6O|1|BB|A|1302
4V6O|1|BB|G|1303
*
4V6O|1|BB|C|1625
4V6O|1|BB|A|1626
4V6O|1|BB|G|1627
*
4V6O|1|BB|C|1639
4V6O|1|BB|A|1640
4V6O|1|BB|A|1641
4V6O|1|BB|G|1642

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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