J3_4V6O_019
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- CGGAAG*CAG*CAAG
- Length
- 13 nucleotides
- Bulged bases
- 4V6O|1|BB|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6O_019 not in the Motif Atlas
- Homologous match to J3_5J7L_041
- Geometric discrepancy: 0.2145
- The information below is about J3_5J7L_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V6O|1|BB|C|1298
4V6O|1|BB|G|1299
4V6O|1|BB|G|1300
4V6O|1|BB|A|1301
4V6O|1|BB|A|1302
4V6O|1|BB|G|1303
*
4V6O|1|BB|C|1625
4V6O|1|BB|A|1626
4V6O|1|BB|G|1627
*
4V6O|1|BB|C|1639
4V6O|1|BB|A|1640
4V6O|1|BB|A|1641
4V6O|1|BB|G|1642
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
No other chains within 10ÅColoring options: