J3_4V6O_032

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V6O|1|AA|U|1212, 4V6O|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6O_032 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.3202

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V6O|1|AA|C|990
4V6O|1|AA|U|991
4V6O|1|AA|U|992
4V6O|1|AA|G|993
4V6O|1|AA|A|994
4V6O|1|AA|C|995
4V6O|1|AA|A|996
4V6O|1|AA|U|997
*
4V6O|1|AA|A|1044
4V6O|1|AA|C|1045
4V6O|1|AA|A|1046
4V6O|1|AA|G|1047
*
4V6O|1|AA|C|1210
4V6O|1|AA|U|1211
4V6O|1|AA|U|1212
4V6O|1|AA|A|1213
4V6O|1|AA|C|1214
4V6O|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein S14