3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V6P|1|AA|U|871, 4V6P|1|AA|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6P_004 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.2017
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4V6P|1|AA|C|826
4V6P|1|AA|U|827
4V6P|1|AA|U|828
4V6P|1|AA|G|829
*
4V6P|1|AA|C|857
4V6P|1|AA|G|858
4V6P|1|AA|G|859
4V6P|1|AA|A|860
4V6P|1|AA|G|861
*
4V6P|1|AA|C|868
4V6P|1|AA|G|869
4V6P|1|AA|U|870
4V6P|1|AA|U|871
4V6P|1|AA|A|872
4V6P|1|AA|A|873
4V6P|1|AA|G|874

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AE
30S ribosomal protein S2
Chain AK
30S ribosomal protein S8
Chain AX
30S ribosomal protein S21

Coloring options:


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