J3_4V6P_012

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V6P|1|AA|U|1240, 4V6P|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6P_012 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.4669

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6P|1|AA|C|1237
4V6P|1|AA|A|1238
4V6P|1|AA|A|1239
4V6P|1|AA|U|1240
4V6P|1|AA|G|1241
*
4V6P|1|AA|C|1296
4V6P|1|AA|G|1297
4V6P|1|AA|U|1298
4V6P|1|AA|A|1299
4V6P|1|AA|G|1300
4V6P|1|AA|U|1301
4V6P|1|AA|C|1302
4V6P|1|AA|C|1303
*
4V6P|1|AA|G|1334
4V6P|1|AA|U|1335
4V6P|1|AA|C|1336
4V6P|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AJ

30S ribosomal protein S7

Chain AP

30S ribosomal protein S13