J3_4V6P_026

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4V6P|1|AA|C|48, 4V6P|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6P_026 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.3014

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V6P|1|AA|G|46
4V6P|1|AA|C|47
4V6P|1|AA|C|48
4V6P|1|AA|U|49
4V6P|1|AA|A|50
4V6P|1|AA|A|51
4V6P|1|AA|C|52
*
4V6P|1|AA|G|359
4V6P|1|AA|G|360
4V6P|1|AA|G|361
4V6P|1|AA|G|362
4V6P|1|AA|A|363
4V6P|1|AA|A|364
4V6P|1|AA|U|365
4V6P|1|AA|A|366
4V6P|1|AA|U|367
*
4V6P|1|AA|A|393
4V6P|1|AA|G|394
4V6P|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S12

Chain AS

30S ribosomal protein S16