J3_4V6P_031

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V6P|1|BB|A|504, 4V6P|1|BB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6P_031 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2151

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6P|1|BB|G|30
4V6P|1|BB|C|31
*
4V6P|1|BB|G|474
4V6P|1|BB|C|475
4V6P|1|BB|G|476
4V6P|1|BB|A|477
4V6P|1|BB|A|478
4V6P|1|BB|A|479
4V6P|1|BB|A|480
4V6P|1|BB|G|481
4V6P|1|BB|A|482
4V6P|1|BB|A|483
4V6P|1|BB|C|484
*
4V6P|1|BB|G|496
4V6P|1|BB|A|497
4V6P|1|BB|G|498
4V6P|1|BB|U|499
4V6P|1|BB|G|500
4V6P|1|BB|A|501
4V6P|1|BB|A|502
4V6P|1|BB|A|503
4V6P|1|BB|A|504
4V6P|1|BB|A|505
4V6P|1|BB|G|506
4V6P|1|BB|A|507
4V6P|1|BB|A|508
4V6P|1|BB|C|509
4V6P|1|BB|C|510

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L20

Chain BU

50S ribosomal protein L22

Chain BW

50S ribosomal protein L24