J3_4V6Q_004

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V6Q|1|AA|U|871, 4V6Q|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Q_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2302

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V6Q|1|AA|C|826
4V6Q|1|AA|U|827
4V6Q|1|AA|U|828
4V6Q|1|AA|G|829
*
4V6Q|1|AA|C|857
4V6Q|1|AA|G|858
4V6Q|1|AA|G|859
4V6Q|1|AA|A|860
4V6Q|1|AA|G|861
*
4V6Q|1|AA|C|868
4V6Q|1|AA|G|869
4V6Q|1|AA|U|870
4V6Q|1|AA|U|871
4V6Q|1|AA|A|872
4V6Q|1|AA|A|873
4V6Q|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

30S ribosomal protein S2

Chain AK

30S ribosomal protein S8

Chain AX

30S ribosomal protein S21