J3_4V6Q_014

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Q_014 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.3177

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

4V6Q|1|BB|G|30
4V6Q|1|BB|C|31
*
4V6Q|1|BB|G|474
4V6Q|1|BB|C|475
4V6Q|1|BB|G|476
4V6Q|1|BB|A|477
4V6Q|1|BB|A|478
4V6Q|1|BB|A|479
4V6Q|1|BB|A|480
4V6Q|1|BB|G|481
*
4V6Q|1|BB|C|509
4V6Q|1|BB|C|510

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L20

Chain BW

50S ribosomal protein L24