J3_4V6Q_020

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V6Q|1|BB|A|1609, 4V6Q|1|BB|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Q_020 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.2477

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V6Q|1|BB|C|1306
4V6Q|1|BB|A|1307
4V6Q|1|BB|A|1308
4V6Q|1|BB|G|1309
*
4V6Q|1|BB|C|1605
4V6Q|1|BB|C|1606
4V6Q|1|BB|C|1607
4V6Q|1|BB|A|1608
4V6Q|1|BB|A|1609
4V6Q|1|BB|A|1610
4V6Q|1|BB|C|1611
*
4V6Q|1|BB|G|1620
4V6Q|1|BB|U|1621
4V6Q|1|BB|G|1622

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34