J3_4V6R_004
3D structure
- PDB id
- 4V6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 4V6R|1|AA|U|871, 4V6R|1|AA|A|873
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6R_004 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.2704
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
4V6R|1|AA|C|826
4V6R|1|AA|U|827
4V6R|1|AA|U|828
4V6R|1|AA|G|829
*
4V6R|1|AA|C|857
4V6R|1|AA|G|858
4V6R|1|AA|G|859
4V6R|1|AA|A|860
4V6R|1|AA|G|861
*
4V6R|1|AA|C|868
4V6R|1|AA|G|869
4V6R|1|AA|U|870
4V6R|1|AA|U|871
4V6R|1|AA|A|872
4V6R|1|AA|A|873
4V6R|1|AA|G|874
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AE
- 30S ribosomal protein S2
- Chain AH
- 30S ribosomal protein S5
- Chain AK
- 30S ribosomal protein S8
- Chain AX
- 30S ribosomal protein S21
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