3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
4V6R|1|BB|A|1609
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6R_020 not in the Motif Atlas
Homologous match to J3_7A0S_007
Geometric discrepancy: 0.2684
The information below is about J3_7A0S_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_47341.1
Basepair signature
cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

4V6R|1|BB|C|1306
4V6R|1|BB|A|1307
4V6R|1|BB|A|1308
4V6R|1|BB|G|1309
*
4V6R|1|BB|C|1605
4V6R|1|BB|C|1606
4V6R|1|BB|C|1607
4V6R|1|BB|A|1608
4V6R|1|BB|A|1609
4V6R|1|BB|A|1610
4V6R|1|BB|C|1611
*
4V6R|1|BB|G|1620
4V6R|1|BB|U|1621
4V6R|1|BB|G|1622

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L34

Coloring options:


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