J3_4V6S_001
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 4V6S|1|AA|A|108
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6S_001 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.4504
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V6S|1|AA|G|10
4V6S|1|AA|C|11
4V6S|1|AA|C|12
4V6S|1|AA|G|13
4V6S|1|AA|U|14
4V6S|1|AA|A|15
4V6S|1|AA|G|16
*
4V6S|1|AA|C|68
4V6S|1|AA|G|69
4V6S|1|AA|C|70
*
4V6S|1|AA|G|106
4V6S|1|AA|G|107
4V6S|1|AA|A|108
4V6S|1|AA|A|109
4V6S|1|AA|C|110
Current chains
- Chain AA
- 5S ribomosomal RNA
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 50S ribosomal protein L18
- Chain AX
- 50S ribosomal protein L25
- Chain AY
- 50S ribosomal protein L27
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