J3_4V6S_016

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V6S|1|BA|U|871, 4V6S|1|BA|A|873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6S_016 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2235

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V6S|1|BA|C|826
4V6S|1|BA|U|827
4V6S|1|BA|U|828
4V6S|1|BA|G|829
*
4V6S|1|BA|C|857
4V6S|1|BA|G|858
4V6S|1|BA|G|859
4V6S|1|BA|A|860
4V6S|1|BA|G|861
*
4V6S|1|BA|C|868
4V6S|1|BA|G|869
4V6S|1|BA|U|870
4V6S|1|BA|U|871
4V6S|1|BA|A|872
4V6S|1|BA|A|873
4V6S|1|BA|G|874

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S2

Chain BJ

30S ribosomal protein S8

Chain BW

30S ribosomal protein S21