J3_4V6S_025

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V6S|1|AB|A|504, 4V6S|1|AB|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6S_025 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2324

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V6S|1|AB|G|30
4V6S|1|AB|C|31
*
4V6S|1|AB|G|474
4V6S|1|AB|C|475
4V6S|1|AB|G|476
4V6S|1|AB|A|477
4V6S|1|AB|A|478
4V6S|1|AB|A|479
4V6S|1|AB|A|480
4V6S|1|AB|G|481
4V6S|1|AB|A|482
4V6S|1|AB|A|483
4V6S|1|AB|C|484
*
4V6S|1|AB|G|496
4V6S|1|AB|A|497
4V6S|1|AB|G|498
4V6S|1|AB|U|499
4V6S|1|AB|G|500
4V6S|1|AB|A|501
4V6S|1|AB|A|502
4V6S|1|AB|A|503
4V6S|1|AB|A|504
4V6S|1|AB|A|505
4V6S|1|AB|G|506
4V6S|1|AB|A|507
4V6S|1|AB|A|508
4V6S|1|AB|C|509
4V6S|1|AB|C|510

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AS

50S ribosomal protein L20

Chain AU

50S ribosomal protein L22

Chain AW

50S ribosomal protein L24