J3_4V6S_040

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V6S|1|BA|U|1240, 4V6S|1|BA|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6S_040 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.3991

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6S|1|BA|C|1237
4V6S|1|BA|A|1238
4V6S|1|BA|A|1239
4V6S|1|BA|U|1240
4V6S|1|BA|G|1241
*
4V6S|1|BA|C|1296
4V6S|1|BA|G|1297
4V6S|1|BA|U|1298
4V6S|1|BA|A|1299
4V6S|1|BA|G|1300
4V6S|1|BA|U|1301
4V6S|1|BA|C|1302
4V6S|1|BA|C|1303
*
4V6S|1|BA|G|1334
4V6S|1|BA|U|1335
4V6S|1|BA|C|1336
4V6S|1|BA|G|1337

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S7

Chain BO

30S ribosomal protein S13