J3_4V6T_003

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V6T|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6T_003 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0708

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V6T|1|AA|C|826
4V6T|1|AA|U|827
4V6T|1|AA|U|828
4V6T|1|AA|G|829
*
4V6T|1|AA|C|857
4V6T|1|AA|G|858
4V6T|1|AA|G|859
4V6T|1|AA|A|860
4V6T|1|AA|G|861
*
4V6T|1|AA|C|868
4V6T|1|AA|G|869
4V6T|1|AA|U|870
4V6T|1|AA|U|871
4V6T|1|AA|A|872
4V6T|1|AA|A|873
4V6T|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21