3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
4V6T|1|AA|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6T_011 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.1427
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V6T|1|AA|C|1237
4V6T|1|AA|A|1238
4V6T|1|AA|A|1239
4V6T|1|AA|U|1240
4V6T|1|AA|G|1241
*
4V6T|1|AA|C|1296
4V6T|1|AA|G|1297
4V6T|1|AA|U|1298
4V6T|1|AA|A|1299
4V6T|1|AA|G|1300
4V6T|1|AA|U|1301
4V6T|1|AA|C|1302
4V6T|1|AA|C|1303
*
4V6T|1|AA|G|1334
4V6T|1|AA|U|1335
4V6T|1|AA|C|1336
4V6T|1|AA|G|1337

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AG
30S ribosomal protein S7
Chain AM
30S ribosomal protein S13

Coloring options:


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