J3_4V6T_040

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6T_040 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0567

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V6T|1|BA|G|1424
4V6T|1|BA|G|1425
4V6T|1|BA|G|1426
4V6T|1|BA|A|1427
4V6T|1|BA|C|1428
4V6T|1|BA|G|1429
*
4V6T|1|BA|C|1564
4V6T|1|BA|C|1565
*
4V6T|1|BA|G|1568
4V6T|1|BA|A|1569
4V6T|1|BA|A|1570
4V6T|1|BA|A|1571
4V6T|1|BA|A|1572
4V6T|1|BA|G|1573
4V6T|1|BA|C|1574

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2