J3_4V6V_004

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V6V|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6V_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1322

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V6V|1|AA|C|826
4V6V|1|AA|U|827
4V6V|1|AA|U|828
4V6V|1|AA|G|829
*
4V6V|1|AA|C|857
4V6V|1|AA|G|858
4V6V|1|AA|G|859
4V6V|1|AA|A|860
4V6V|1|AA|G|861
*
4V6V|1|AA|C|868
4V6V|1|AA|G|869
4V6V|1|AA|U|870
4V6V|1|AA|U|871
4V6V|1|AA|A|872
4V6V|1|AA|A|873
4V6V|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21