3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6V_019 not in the Motif Atlas
Homologous match to J3_6PRV_001
Geometric discrepancy: 0.2714
The information below is about J3_6PRV_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.5
Basepair signature
cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Number of instances in this motif group
7

Unit IDs

4V6V|1|BA|G|1055
4V6V|1|BA|G|1056
4V6V|1|BA|A|1057
*
4V6V|1|BA|U|1081
4V6V|1|BA|U|1082
4V6V|1|BA|U|1083
4V6V|1|BA|A|1084
4V6V|1|BA|A|1085
4V6V|1|BA|A|1086
4V6V|1|BA|G|1087
*
4V6V|1|BA|C|1102
4V6V|1|BA|A|1103
4V6V|1|BA|C|1104

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B9
50S ribosomal protein L36
Chain BJ
50S ribosomal protein L10
Chain BK
50S ribosomal protein L11

Coloring options:


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