J3_4V6X_005

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

4V6X|1|A5|A|1534, 4V6X|1|A5|G|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6X_005 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.128

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6X|1|A5|U|1531
4V6X|1|A5|G|1532
4V6X|1|A5|A|1533
4V6X|1|A5|A|1534
4V6X|1|A5|C|1535
4V6X|1|A5|U|1536
4V6X|1|A5|A|1537
*
4V6X|1|A5|U|1622
4V6X|1|A5|A|1623
4V6X|1|A5|G|1624
*
4V6X|1|A5|C|1640
4V6X|1|A5|G|1641
4V6X|1|A5|A|1642
4V6X|1|A5|A|1643

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L8

Chain CN

60S ribosomal protein L15

Chain Cj

60S ribosomal protein L37