J3_4V6X_021
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_021 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.2032
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6X|1|B2|C|1218
4V6X|1|B2|C|1219
4V6X|1|B2|A|1220
4V6X|1|B2|G|1221
*
4V6X|1|B2|C|1645
4V6X|1|B2|C|1646
4V6X|1|B2|A|1647
4V6X|1|B2|G|1648
4V6X|1|B2|U|1649
4V6X|1|B2|A|1650
4V6X|1|B2|A|1651
*
4V6X|1|B2|U|1673
4V6X|1|B2|G|1674
4V6X|1|B2|A|1675
4V6X|1|B2|U|1676
4V6X|1|B2|U|1677
4V6X|1|B2|A|1678
4V6X|1|B2|A|1679
4V6X|1|B2|G|1680
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AF
- 40S ribosomal protein S5
- Chain AQ
- 40S ribosomal protein S16
- Chain AR
- 40S ribosomal protein S17
- Chain Ac
- 40S ribosomal protein S28
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