J3_4V6X_023
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 4V6X|1|B2|G|1256, 4V6X|1|B2|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_023 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.2023
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V6X|1|B2|C|1237
4V6X|1|B2|U|1238
4V6X|1|B2|U|1239
4V6X|1|B2|A|1240
4V6X|1|B2|A|1241
4V6X|1|B2|U|1242
4V6X|1|B2|U|1243
4V6X|1|B2|U|1244
*
4V6X|1|B2|G|1255
4V6X|1|B2|G|1256
4V6X|1|B2|G|1257
4V6X|1|B2|A|1258
4V6X|1|B2|A|1259
4V6X|1|B2|A|1260
4V6X|1|B2|C|1261
4V6X|1|B2|C|1262
4V6X|1|B2|U|1263
4V6X|1|B2|C|1264
4V6X|1|B2|A|1265
4V6X|1|B2|C|1266
*
4V6X|1|B2|G|1516
4V6X|1|B2|G|1517
4V6X|1|B2|C|1518
4V6X|1|B2|U|1519
4V6X|1|B2|G|1520
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AP
- 40S ribosomal protein S15
- Chain AS
- 40S ribosomal protein S18
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
- Chain Af
- 40S ribosomal protein S27a
- Chain Ah
- Plasminogen activator inhibitor 1 RNA-binding protein
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