J3_4V6X_024
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 4V6X|1|B2|G|1274, 4V6X|1|B2|G|1507
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_024 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1949
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V6X|1|B2|C|1272
4V6X|1|B2|C|1273
4V6X|1|B2|G|1274
4V6X|1|B2|G|1275
4V6X|1|B2|A|1276
4V6X|1|B2|C|1277
*
4V6X|1|B2|G|1320
4V6X|1|B2|G|1321
4V6X|1|B2|G|1322
4V6X|1|B2|U|1323
4V6X|1|B2|G|1324
*
4V6X|1|B2|U|1504
4V6X|1|B2|U|1505
4V6X|1|B2|A|1506
4V6X|1|B2|G|1507
4V6X|1|B2|A|1508
4V6X|1|B2|U|1509
4V6X|1|B2|G|1510
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AK
- 40S ribosomal protein S10
- Chain Ad
- 40S ribosomal protein S29
- Chain Af
- 40S ribosomal protein S27a
- Chain Az
- Elongation factor 2
Coloring options: