J3_4V6Y_011

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V6Y|1|AA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Y_011 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.5608

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V6Y|1|AA|C|1237
4V6Y|1|AA|A|1238
4V6Y|1|AA|A|1239
4V6Y|1|AA|U|1240
4V6Y|1|AA|G|1241
*
4V6Y|1|AA|C|1296
4V6Y|1|AA|G|1297
4V6Y|1|AA|U|1298
4V6Y|1|AA|A|1299
4V6Y|1|AA|G|1300
4V6Y|1|AA|U|1301
4V6Y|1|AA|C|1302
4V6Y|1|AA|C|1303
*
4V6Y|1|AA|G|1334
4V6Y|1|AA|U|1335
4V6Y|1|AA|C|1336
4V6Y|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13