J3_4V6Y_026

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Y_026 not in the Motif Atlas

Homologous match to J3_7A0S_014

Geometric discrepancy: 0.2841

The information below is about J3_7A0S_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_13944.1

Basepair signature

cWW-F-F-tSS-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6Y|1|BB|G|10
4V6Y|1|BB|C|11
4V6Y|1|BB|C|12
4V6Y|1|BB|G|13
4V6Y|1|BB|U|14
4V6Y|1|BB|A|15
4V6Y|1|BB|G|16
*
4V6Y|1|BB|C|68
4V6Y|1|BB|G|69
4V6Y|1|BB|C|70
*
4V6Y|1|BB|G|106
4V6Y|1|BB|G|107
4V6Y|1|BB|A|108
4V6Y|1|BB|A|109
4V6Y|1|BB|C|110

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BO

50S ribosomal protein L16

Chain BW

50S ribosomal protein L24