J3_4V6Y_034

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V6Y|1|BA|A|504, 4V6Y|1|BA|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6Y_034 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2291

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V6Y|1|BA|G|30
4V6Y|1|BA|C|31
*
4V6Y|1|BA|G|474
4V6Y|1|BA|C|475
4V6Y|1|BA|G|476
4V6Y|1|BA|A|477
4V6Y|1|BA|A|478
4V6Y|1|BA|A|479
4V6Y|1|BA|A|480
4V6Y|1|BA|G|481
4V6Y|1|BA|A|482
4V6Y|1|BA|A|483
4V6Y|1|BA|C|484
*
4V6Y|1|BA|G|496
4V6Y|1|BA|A|497
4V6Y|1|BA|G|498
4V6Y|1|BA|U|499
4V6Y|1|BA|G|500
4V6Y|1|BA|A|501
4V6Y|1|BA|A|502
4V6Y|1|BA|A|503
4V6Y|1|BA|A|504
4V6Y|1|BA|A|505
4V6Y|1|BA|G|506
4V6Y|1|BA|A|507
4V6Y|1|BA|A|508
4V6Y|1|BA|C|509
4V6Y|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L18

Chain BS

50S ribosomal protein L20

Chain BU

50S ribosomal protein L22