J3_4V70_034

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V70|1|BA|A|504, 4V70|1|BA|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V70_034 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.2772

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V70|1|BA|G|30
4V70|1|BA|C|31
*
4V70|1|BA|G|474
4V70|1|BA|C|475
4V70|1|BA|G|476
4V70|1|BA|A|477
4V70|1|BA|A|478
4V70|1|BA|A|479
4V70|1|BA|A|480
4V70|1|BA|G|481
4V70|1|BA|A|482
4V70|1|BA|A|483
4V70|1|BA|C|484
*
4V70|1|BA|G|496
4V70|1|BA|A|497
4V70|1|BA|G|498
4V70|1|BA|U|499
4V70|1|BA|G|500
4V70|1|BA|A|501
4V70|1|BA|A|502
4V70|1|BA|A|503
4V70|1|BA|A|504
4V70|1|BA|A|505
4V70|1|BA|G|506
4V70|1|BA|A|507
4V70|1|BA|A|508
4V70|1|BA|C|509
4V70|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24