J3_4V71_004

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V71|1|AA|U|871

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V71_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.3664

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V71|1|AA|C|826
4V71|1|AA|U|827
4V71|1|AA|U|828
4V71|1|AA|G|829
*
4V71|1|AA|C|857
4V71|1|AA|G|858
4V71|1|AA|G|859
4V71|1|AA|A|860
4V71|1|AA|G|861
*
4V71|1|AA|C|868
4V71|1|AA|G|869
4V71|1|AA|U|870
4V71|1|AA|U|871
4V71|1|AA|A|872
4V71|1|AA|A|873
4V71|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21