J3_4V71_012

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V71|1|AA|U|1240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V71_012 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.3866

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V71|1|AA|C|1237
4V71|1|AA|A|1238
4V71|1|AA|A|1239
4V71|1|AA|U|1240
4V71|1|AA|G|1241
*
4V71|1|AA|C|1296
4V71|1|AA|G|1297
4V71|1|AA|U|1298
4V71|1|AA|A|1299
4V71|1|AA|G|1300
4V71|1|AA|U|1301
4V71|1|AA|C|1302
4V71|1|AA|C|1303
*
4V71|1|AA|G|1334
4V71|1|AA|U|1335
4V71|1|AA|C|1336
4V71|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13