J3_4V72_032

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V72|1|BA|A|504, 4V72|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V72_032 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.2534

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V72|1|BA|G|30
4V72|1|BA|C|31
*
4V72|1|BA|G|474
4V72|1|BA|C|475
4V72|1|BA|G|476
4V72|1|BA|A|477
4V72|1|BA|A|478
4V72|1|BA|A|479
4V72|1|BA|A|480
4V72|1|BA|G|481
4V72|1|BA|A|482
4V72|1|BA|A|483
4V72|1|BA|C|484
*
4V72|1|BA|G|496
4V72|1|BA|A|497
4V72|1|BA|G|498
4V72|1|BA|U|499
4V72|1|BA|G|500
4V72|1|BA|A|501
4V72|1|BA|A|502
4V72|1|BA|A|503
4V72|1|BA|A|504
4V72|1|BA|A|505
4V72|1|BA|G|506
4V72|1|BA|A|507
4V72|1|BA|A|508
4V72|1|BA|C|509
4V72|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24