J3_4V72_033

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

4V72|1|BA|U|448, 4V72|1|BA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V72_033 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.2153

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

4V72|1|BA|C|32
4V72|1|BA|C|33
4V72|1|BA|U|34
4V72|1|BA|G|35
*
4V72|1|BA|C|445
4V72|1|BA|G|446
4V72|1|BA|A|447
4V72|1|BA|U|448
4V72|1|BA|A|449
4V72|1|BA|G|450
4V72|1|BA|U|451
4V72|1|BA|G|452
4V72|1|BA|A|453
4V72|1|BA|A|454
4V72|1|BA|C|455
4V72|1|BA|C|456
4V72|1|BA|A|457
4V72|1|BA|G|458
4V72|1|BA|U|459
4V72|1|BA|A|460
4V72|1|BA|C|461
*
4V72|1|BA|G|468
4V72|1|BA|G|469
4V72|1|BA|A|470
4V72|1|BA|A|471
4V72|1|BA|A|472
4V72|1|BA|G|473

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BE

50S ribosomal protein L4

Chain BQ

50S ribosomal protein L20

Chain BT

50S ribosomal protein L23