J3_4V72_037

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4V72|1|AA|A|50, 4V72|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V72_037 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1995

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V72|1|AA|G|46
4V72|1|AA|C|47
4V72|1|AA|C|48
4V72|1|AA|U|49
4V72|1|AA|A|50
4V72|1|AA|A|51
4V72|1|AA|C|52
*
4V72|1|AA|G|359
4V72|1|AA|G|360
4V72|1|AA|G|361
4V72|1|AA|G|362
4V72|1|AA|A|363
4V72|1|AA|A|364
4V72|1|AA|U|365
4V72|1|AA|A|366
4V72|1|AA|U|367
*
4V72|1|AA|A|393
4V72|1|AA|G|394
4V72|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16