3D structure

PDB id
4V73 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
4V73|1|BA|A|504, 4V73|1|BA|A|508, 4V73|1|BA|C|509
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V73_033 not in the Motif Atlas
Homologous match to J3_4WF9_011
Geometric discrepancy: 0.24
The information below is about J3_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V73|1|BA|G|30
4V73|1|BA|C|31
*
4V73|1|BA|G|474
4V73|1|BA|C|475
4V73|1|BA|G|476
4V73|1|BA|A|477
4V73|1|BA|A|478
4V73|1|BA|A|479
4V73|1|BA|A|480
4V73|1|BA|G|481
4V73|1|BA|A|482
4V73|1|BA|A|483
4V73|1|BA|C|484
*
4V73|1|BA|G|496
4V73|1|BA|A|497
4V73|1|BA|G|498
4V73|1|BA|U|499
4V73|1|BA|G|500
4V73|1|BA|A|501
4V73|1|BA|A|502
4V73|1|BA|A|503
4V73|1|BA|A|504
4V73|1|BA|A|505
4V73|1|BA|G|506
4V73|1|BA|A|507
4V73|1|BA|A|508
4V73|1|BA|C|509
4V73|1|BA|C|510

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BQ
50S ribosomal protein L20
Chain BS
50S ribosomal protein L22
Chain BU
50S ribosomal protein L24

Coloring options:


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