3D structure

PDB id
4V76 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CUA*UAG*CAUAAG
Length
12 nucleotides
Bulged bases
4V76|1|BA|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V76_023 not in the Motif Atlas
Homologous match to J3_5J7L_045
Geometric discrepancy: 0.2255
The information below is about J3_5J7L_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_61124.2
Basepair signature
cWW-tWH-tWW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

4V76|1|BA|C|2295
4V76|1|BA|U|2296
4V76|1|BA|A|2297
*
4V76|1|BA|U|2321
4V76|1|BA|A|2322
4V76|1|BA|G|2323
*
4V76|1|BA|C|2332
4V76|1|BA|A|2333
4V76|1|BA|U|2334
4V76|1|BA|A|2335
4V76|1|BA|A|2336
4V76|1|BA|G|2337

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain A1
Transfer RNA; tRNA
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BF
50S ribosomal protein L5
Chain BO
50S ribosomal protein L18
Chain BW
50S ribosomal protein L27

Coloring options:


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