J3_4V76_033

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V76|1|BA|A|504, 4V76|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V76_033 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2313

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V76|1|BA|G|30
4V76|1|BA|C|31
*
4V76|1|BA|G|474
4V76|1|BA|C|475
4V76|1|BA|G|476
4V76|1|BA|A|477
4V76|1|BA|A|478
4V76|1|BA|A|479
4V76|1|BA|A|480
4V76|1|BA|G|481
4V76|1|BA|A|482
4V76|1|BA|A|483
4V76|1|BA|C|484
*
4V76|1|BA|G|496
4V76|1|BA|A|497
4V76|1|BA|G|498
4V76|1|BA|U|499
4V76|1|BA|G|500
4V76|1|BA|A|501
4V76|1|BA|A|502
4V76|1|BA|A|503
4V76|1|BA|A|504
4V76|1|BA|A|505
4V76|1|BA|G|506
4V76|1|BA|A|507
4V76|1|BA|A|508
4V76|1|BA|C|509
4V76|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24