3D structure

PDB id
4V76 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4V76|1|BA|U|34, 4V76|1|BA|U|448, 4V76|1|BA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V76_034 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.2334
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4V76|1|BA|C|32
4V76|1|BA|C|33
4V76|1|BA|U|34
4V76|1|BA|G|35
*
4V76|1|BA|C|445
4V76|1|BA|G|446
4V76|1|BA|A|447
4V76|1|BA|U|448
4V76|1|BA|A|449
4V76|1|BA|G|450
4V76|1|BA|U|451
4V76|1|BA|G|452
4V76|1|BA|A|453
4V76|1|BA|A|454
4V76|1|BA|C|455
4V76|1|BA|C|456
4V76|1|BA|A|457
4V76|1|BA|G|458
4V76|1|BA|U|459
4V76|1|BA|A|460
4V76|1|BA|C|461
*
4V76|1|BA|G|468
4V76|1|BA|G|469
4V76|1|BA|A|470
4V76|1|BA|A|471
4V76|1|BA|A|472
4V76|1|BA|G|473

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B2
50S ribosomal protein L34
Chain BE
50S ribosomal protein L4
Chain BQ
50S ribosomal protein L20
Chain BS
50S ribosomal protein L22
Chain BT
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1236 s