J3_4V78_013

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V78|1|AA|U|1240, 4V78|1|AA|G|1297

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V78_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.3989

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V78|1|AA|C|1237
4V78|1|AA|A|1238
4V78|1|AA|A|1239
4V78|1|AA|U|1240
4V78|1|AA|G|1241
*
4V78|1|AA|C|1296
4V78|1|AA|G|1297
4V78|1|AA|U|1298
4V78|1|AA|A|1299
4V78|1|AA|G|1300
4V78|1|AA|U|1301
4V78|1|AA|C|1302
4V78|1|AA|C|1303
*
4V78|1|AA|G|1334
4V78|1|AA|U|1335
4V78|1|AA|C|1336
4V78|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13