J3_4V78_032

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V78|1|BA|A|504, 4V78|1|BA|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V78_032 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.1826

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V78|1|BA|G|30
4V78|1|BA|C|31
*
4V78|1|BA|G|474
4V78|1|BA|C|475
4V78|1|BA|G|476
4V78|1|BA|A|477
4V78|1|BA|A|478
4V78|1|BA|A|479
4V78|1|BA|A|480
4V78|1|BA|G|481
4V78|1|BA|A|482
4V78|1|BA|A|483
4V78|1|BA|C|484
*
4V78|1|BA|G|496
4V78|1|BA|A|497
4V78|1|BA|G|498
4V78|1|BA|U|499
4V78|1|BA|G|500
4V78|1|BA|A|501
4V78|1|BA|A|502
4V78|1|BA|A|503
4V78|1|BA|A|504
4V78|1|BA|A|505
4V78|1|BA|G|506
4V78|1|BA|A|507
4V78|1|BA|A|508
4V78|1|BA|C|509
4V78|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24