3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V79|1|AA|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V79_003 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.3027
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4V79|1|AA|C|826
4V79|1|AA|U|827
4V79|1|AA|U|828
4V79|1|AA|G|829
*
4V79|1|AA|C|857
4V79|1|AA|G|858
4V79|1|AA|G|859
4V79|1|AA|A|860
4V79|1|AA|G|861
*
4V79|1|AA|C|868
4V79|1|AA|G|869
4V79|1|AA|U|870
4V79|1|AA|U|871
4V79|1|AA|A|872
4V79|1|AA|A|873
4V79|1|AA|G|874

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AU
30S ribosomal protein S21

Coloring options:


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