3D structure

PDB id
4V7B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V7B|1|AA|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7B_001 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0614
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4V7B|1|AA|C|826
4V7B|1|AA|U|827
4V7B|1|AA|U|828
4V7B|1|AA|G|829
*
4V7B|1|AA|C|857
4V7B|1|AA|G|858
4V7B|1|AA|G|859
4V7B|1|AA|A|860
4V7B|1|AA|G|861
*
4V7B|1|AA|C|868
4V7B|1|AA|G|869
4V7B|1|AA|U|870
4V7B|1|AA|U|871
4V7B|1|AA|A|872
4V7B|1|AA|A|873
4V7B|1|AA|G|874

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal protein S2
Chain AH
30S ribosomal protein S8
Chain AU
30S ribosomal protein S21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1089 s
Application loaded.