J3_4V7E_003
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|820, 4V7E|1|Aa|G|927
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_003 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1171
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V7E|1|Aa|U|817
4V7E|1|Aa|G|818
4V7E|1|Aa|A|819
4V7E|1|Aa|A|820
4V7E|1|Aa|C|821
4V7E|1|Aa|U|822
4V7E|1|Aa|A|823
*
4V7E|1|Aa|U|908
4V7E|1|Aa|A|909
4V7E|1|Aa|G|910
*
4V7E|1|Aa|C|926
4V7E|1|Aa|G|927
4V7E|1|Aa|A|928
4V7E|1|Aa|A|929
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CA
- 60S ribosomal protein L2
- Chain CN
- 60S ribosomal protein L15E
- Chain Cj
- 60S ribosomal protein L37E
- Chain Cl
- 60S ribosomal protein L39E
Coloring options: