J3_4V7E_007
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 4V7E|1|Aa|U|1836, 4V7E|1|Aa|A|1837
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_007 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0988
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V7E|1|Aa|G|1491
4V7E|1|Aa|A|1492
4V7E|1|Aa|A|1493
4V7E|1|Aa|A|1494
*
4V7E|1|Aa|U|1833
4V7E|1|Aa|C|1834
4V7E|1|Aa|A|1835
4V7E|1|Aa|U|1836
4V7E|1|Aa|A|1837
4V7E|1|Aa|A|1838
4V7E|1|Aa|C|1839
*
4V7E|1|Aa|G|1848
4V7E|1|Aa|U|1849
4V7E|1|Aa|C|1850
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Cg
- 60S ribosomal protein L34E
- Chain Cj
- 60S ribosomal protein L37E
- Chain Cl
- 60S ribosomal protein L39E
Coloring options: