J3_4V7E_018

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

4V7E|1|Ad|G|1451, 4V7E|1|Ad|U|1453

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_018 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1968

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4V7E|1|Ad|C|1219
4V7E|1|Ad|C|1220
4V7E|1|Ad|A|1221
4V7E|1|Ad|G|1222
4V7E|1|Ad|A|1223
4V7E|1|Ad|C|1224
*
4V7E|1|Ad|G|1267
4V7E|1|Ad|G|1268
4V7E|1|Ad|G|1269
4V7E|1|Ad|U|1270
4V7E|1|Ad|G|1271
*
4V7E|1|Ad|U|1448
4V7E|1|Ad|U|1449
4V7E|1|Ad|A|1450
4V7E|1|Ad|G|1451
4V7E|1|Ad|A|1452
4V7E|1|Ad|U|1453
4V7E|1|Ad|G|1454

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10E

Chain Bd

40S ribosomal protein S14

Chain Bf

40S ribosomal protein S31e