J3_4V7E_029

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UC*GGAUG*CAUGGA

Length

13 nucleotides

Bulged bases

4V7E|1|Aa|U|1069

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_029 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.3246

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|U|990
4V7E|1|Aa|C|991
*
4V7E|1|Aa|G|1066
4V7E|1|Aa|G|1067
4V7E|1|Aa|A|1068
4V7E|1|Aa|U|1069
4V7E|1|Aa|G|1070
*
4V7E|1|Aa|C|1096
4V7E|1|Aa|A|1097
4V7E|1|Aa|U|1098
4V7E|1|Aa|G|1099
4V7E|1|Aa|G|1100
4V7E|1|Aa|A|1101

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L30

Chain CT

60S ribosomal protein L21E

Chain Cb

60S ribosomal protein L29E