J3_4V7E_032

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GA*UUAGG*CC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7E_032 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2575

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V7E|1|Aa|G|1628
4V7E|1|Aa|A|1629
*
4V7E|1|Aa|U|1638
4V7E|1|Aa|U|1639
4V7E|1|Aa|A|1640
4V7E|1|Aa|G|1641
4V7E|1|Aa|G|1642
*
4V7E|1|Aa|C|1806
4V7E|1|Aa|C|1807

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CZ

60S ribosomal protein L27E

Chain Cg

60S ribosomal protein L34E